High-throughput identification of combinatorial ligands for DNA delivery in cell culture.

Finding the optimal combinations of ligands for tissue-specific delivery is tedious even if only a few well-established compds. are tested. The cargo affects the receptor-ligand interaction, esp. when it is charged like DNA. The ligand should therefore be evaluated together with its cargo. Several viruses have been shown to interact with more than one receptor, for efficient internalization. We here present a DNA oligonucleotide-based method for inexpensive and rapid screening of biotin labeled ligands for combinatorial effects on cellular binding and uptake. The oligonucleotide complex was designed as a 44 bp double-stranded DNA oligonucleotide with one central streptavidin mol. and a second streptavidin at the terminus. The use of a highly advanced robotic platform ensured stringent processing and execution of the expts. The oligonucleotides were fluorescently labeled and used for detection and anal. of cell-bound, internalized and intra-cellular compartmentalized constructs by an automated line-scanning confocal microscope, IN Cell Analyzer 3000. All possible combinations of 22 ligands were explored in sets of 2 and tested on 6 different human cell lines in triplicates. In total, 10,000 transfections were performed on the automation platform. Cell-specific combinations of ligands were identified and their relative position on the scaffold oligonucleotide was found to be of importance. The ligands were found to be cargo dependent, carbohydrates were more potent for DNA delivery whereas cell penetrating peptides were more potent for delivery of less charged particles. (c) 2008 American Institute of Physics. [on SciFinder(R)]


High-throughput identification of combinatorial ligands for DNA delivery in cell culture.
Type de publication
Article de revue
Année de publication
AIP Conf. Proc.
Soumis le 12 avril 2018